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non redundant protein sequence database nr  (Biotechnology Information)

 
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    Biotechnology Information non redundant protein sequence database nr
    Non Redundant Protein Sequence Database Nr, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/non+redundant+protein+sequence+database+nr/database+ncbi+non+redundant/pm42117702-34-14-24
    Average 86 stars, based on 1 article reviews
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    Sequencing:

    Article Title: Gut Bacteria Improve Depressive Symptoms by Degrading Cortisol into Androgen
    Article Snippet: .. The sequence of the des‐like enzyme was used as a query in a BLASTp search of the non‐redundant protein sequence database (NR) at the National Centre for Biotechnology Information (NCBI). ..

    Article Title: Role of the Mycoplasma bovis deoC gene in nucleoside catabolism and host cell survival.
    Article Snippet: .. Homologs of proteins in other mycoplasma species were identified using BlastP to search the non-redundant protein sequence database (nr) from the National Centre for Biotechnology Information (NCBI) (https://www.ncbi.nlm.nih.gov). ..

    Article Title: Gut Bacteria Improve Depressive Symptoms by Degrading Cortisol into Androgen.
    Article Snippet: .. Abundance of Des-Like Enzyme: The sequence of the des-like enzyme was used as a query in a BLASTp search of the non-redundant protein sequence database (NR) at the National Centre for Biotechnology Information (NCBI). ..



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    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, <t>NCBI</t> ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
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    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, <t>NCBI</t> ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
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    Biotechnology Information ncbi non redundant protein sequence nr database
    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, <t>NCBI</t> ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.
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    (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, NCBI ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.

    Journal: bioRxiv

    Article Title: An enzyme-level benchmark based on environmental bacterial laccases for predicting contaminant fate in water

    doi: 10.64898/2026.01.27.701970

    Figure Lengend Snippet: (A) Approximate maximum-likelihood phylogenetic tree of the multicopper oxidase MCO1 from Nitrosomonas sp. and two new laccases experimentally validated in this study from a methane-oxidizing bacterium (mMCO, NCBI ID: HEY7867587.1) and a soil ammonia-oxidizing archaeon (aMCO, HYV56308.1) displayed relative to other uncharacterized homologs in global metagenomic datasets colored by metagenomically-assigned phylum of origin. (B) Biogeographic distribution of MCO1 homologs from samples where location information was recorded in environmental sample metadata. Two samples were from notably contaminated sites: Red triangle = soil site contaminated with 1000 mg Cr (VI) kg - . Red circle = crude-oil contaminated marine sediment site.

    Article Snippet: The National Center for Biotechnology Information (NCBI) non-redundant protein sequences database (nr) was queried using BLASTP with the above-listed stringent homology parameters, resulting in 960 unique protein sequences.

    Techniques: Environmental Sampling